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model design
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DESeq2 model design for paired samples with multiple factors
deseq2
rnaseq
model design
7.1 years ago
swillis4
▴ 10
0
votes
1
reply
3.8k
views
DESeq2 design model/contrasts question 3 level condition
deseq2
model design
differential gene expression
experimental design
updated 8.0 years ago by
Michael Love
43k • written 8.0 years ago by
L_K
• 0
5
votes
30
replies
6.9k
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DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2
multiple time points
time course
casecontrol
model design
updated 10 months ago by
wuwenhui2
• 0 • written 8.6 years ago by
heikki.sarin
▴ 10
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Comment: soGGi error
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Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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